1
Professor of Biostatistics, department of Biostatistics, faculty of Medical Sciences, Tarbiat modares University, Tehran, Iran. Corresponding author, kazem_an@modares.ac.ir
2
GraduatedstudentofBiostatistics, department of Biostatistics, faculty of Medical Sciences, Tarbiat modares University, Tehran, Iran.
3
Assistant professor of Biostatistics, department of Biostatistics, faculty of Health, Kermanshah University of Medical Sciences, Krmanshah, Iran.
Abstract
Dueto the sparsity and separation and a large amount of calculations in high-order interactions, Logistic regression is not accurate enough to detect the main and interaction effects between genetic markers at very high orders. The multifactorial dimension reduction algorithm is considered a powerful algorithm for identifying high-order interactions in high dimensional structures. In this study, information of 748 patients with Behcet’s disease who were referred to the Rheumatology Research Center, Shariati Hospital, Tehran, and 776 healthy controls were used to identify the interaction effects between ERAP1 gene polymorphisms involved in the occurrence of Behcet’s disease using the multifactor dimensionality reduction algorithm. Data analysis was performed using MDR 3.0.2 software. The models obtained from the multifactorial dimensional reduction algorithm with balanced accuracy above 0.6 have been determined to increase the risk of Behcet’s disease. The multi-factor reduction algorithm has high power and speed in calculating the interaction effects of polymorphisms or genetic mutations and identifying important interactions.
Kazemnejad Lili, A., Riahi Qara Baba, P. & Mostafaei, S. (2021). Application of multifactor dimensionality reduction (MDR)
algorithm in detecting the n-locus models related to Behcet’s disease. Andishe_ye Amari, 26(1), 89-96.
MLA
Kazemnejad Lili, A., Riahi Qara Baba, P., & Mostafaei, S. "Application of multifactor dimensionality reduction (MDR)
algorithm in detecting the n-locus models related to Behcet’s disease", Andishe_ye Amari, 26, 1, 2021, 89-96.
HARVARD
Kazemnejad Lili A., Riahi Qara Baba P., Mostafaei S. (2021). 'Application of multifactor dimensionality reduction (MDR)
algorithm in detecting the n-locus models related to Behcet’s disease', Andishe_ye Amari, 26(1), pp. 89-96.
CHICAGO
A. Kazemnejad Lili, P. Riahi Qara Baba & S. Mostafaei, "Application of multifactor dimensionality reduction (MDR)
algorithm in detecting the n-locus models related to Behcet’s disease," Andishe_ye Amari, 26 1 (2021): 89-96,
VANCOUVER
Kazemnejad Lili A., Riahi Qara Baba P., Mostafaei S. Application of multifactor dimensionality reduction (MDR)
algorithm in detecting the n-locus models related to Behcet’s disease. Andishe_ye Amari. 2021;26(1):89-96 (In Persian).